Skip to main content

Transforming the understanding
and treatment of mental illnesses.

Celebrating 75 Years! Learn More >>

 Archived Content

The National Institute of Mental Health archives materials that are over 4 years old and no longer being updated. The content on this page is provided for historical reference purposes only and may not reflect current knowledge or information.

Connectome Map More Than Doubles Human Cortex’s Known Regions

Software automatically detects each area’s “fingerprint” in scans – NIH-funded study

Press Release

Researchers have mapped 180 distinct areas in our brain’s outer mantle, or cortex – more than twice the number previously known. They have also developed software that automatically detects the “fingerprint” of each of these areas in an individual’s brain scans.  Funded by the National Institutes of Health through its Human Connectome Project  (HCP), this software correctly mapped the areas by incorporating data from multiple non-invasive brain imaging measures that corroborated each other.

“These new insights and tools should help to explain how our cortex evolved and the roles of its specialized areas in health and disease, and could eventually hold promise for unprecedented precision in brain surgery and clinical work-ups,” said Bruce Cuthbert, Ph.D., acting director of NIH’s National Institute of Mental Health (NIMH), which co-funded the research as part of the HCP.

The new study identified – with a nearly 97 percent detection rate – 97 new cortex areas per hemisphere, in addition to confirming 83 that were previously known.

NIMH grantees David Van Essen, Ph.D., and Matthew Glasser, Ph.D., of Washington University in St. Louis, and colleagues at six other researcher centers, report on their discoveries July 20, 2016 in the journal Nature.

Earlier studies of cortex organization often used just one measure, such as examining postmortem tissue with a microscope. Uncertain delineation of cortex areas has sometimes led to shaky comparability of brain imaging findings.

“The situation is analogous to astronomy where ground-based telescopes produced relatively blurry images of the sky before the advent of adaptive optics and space telescopes,” noted Glasser, lead author of the study.

The HCP team set out to banish this blurriness by using multiple, precisely aligned, magnetic resonance imaging (MRI) modalities to measure cortical architecture, activity, connectivity, and topography in a group of 210 healthy participants.  These measures – including cortex thickness, cortex myelin content, task and resting-state functional MRI (fMRI) – cross-validated each other. The findings were, in turn, confirmed in an additional independent sample of 210 healthy participants.

Even though some cortex areas turned out to be atypically located in a small minority of subjects, the data-derived algorithms incorporated into the software were able to successfully map them. While the study included fMRI scans of subjects performing tasks, the researchers determined that resting-state MRI techniques should suffice to map the areas in future studies using the tools they developed.  Some areas may turn out to have further subdivisions or be subunits of other areas, in light of new data, noted senior author Van Essen.

“The ability to discriminate individual differences in the location, size, and topology of cortical areas from differences in their activity or connectivity should facilitate understanding of how each property is related to behavior and genetic underpinnings,” added Glasser.

The automated “areal classifier” and related tools are being shared with the research community via HCP websites . In addition, the extensively analyzed data underlying each of the published figures can be accessed via an NIH-funded database developed in the Van Essen laboratory ( ). 

map of areas in human cortex

The researchers discovered that our brain’s cortex, or outer mantle, is composed of 180 distinct areas per hemisphere. For example, the image above shows areas connected to the three main senses – hearing (red), touch (green) vision (blue) and opposing cognitive systems (light and dark).  The map is based on data from resting state fMRI scans performed as part of the Human Connectome Project. Source: Matthew Glasser, Ph.D., and David Van Essen, Ph.D., Washington University


The Human Connectome Project: Past, Present and Future


Dr. David Van Essen, of Washington University, presented findings of the first phase of the Human Connectome Project during a recent talk at NIH. He explains how combining information about the cortex’s architecture, topography, connectivity, and function led to identification of 180 distinct areas – beginning at about 01:06:02.


Glasser MF, Coalson TS, Robinson EC, Hacker CD, Harwell J, Yacoub E, Ugurbil K, Anderson J, Beckmann DF, Jenkinson M Smith SM, Van Essen D, A multi-modal parcellation of human cerebral cortex. July 20, 2016. Nature.


MH097312, MH60974, MH099877, MH091657


About the National Institute of Mental Health (NIMH): The mission of the NIMH  is to transform the understanding and treatment of mental illnesses through basic and clinical research, paving the way for prevention, recovery and cure. For more information, visit the NIMH website.

About the National Institutes of Health (NIH): NIH, the nation's medical research agency, includes 27 Institutes and Centers and is a component of the U.S. Department of Health and Human Services. NIH is the primary federal agency conducting and supporting basic, clinical, and translational medical research, and is investigating the causes, treatments, and cures for both common and rare diseases. For more information about NIH and its programs, visit the NIH website .

NIH…Turning Discovery Into Health®

About the Human Connectome Project: The HCP is a project of the NIH Blueprint for Neuroscience Research . This collaborative framework includes the NIH Office of the Director and 15 NIH Institutes and Centers that support research on the nervous system. By pooling resources and expertise, Blueprint identifies cross-cutting areas of research, and confronts challenges too large for any single Institute or Center.